It depends what time you arrive in Kyoto, but if you're arriving early then I would go to the furthest Arashiyama first and then visit Kinkaku-ji, Nishiki market, and Fushimi Inari. If you're arriving around noon, then I would give up going to Arashiyama because you probably won't have any time. And about the Cup Noodle Museum, its in Yokohama not Kyoto, so you won't be able to visit it. If you have a free day while in Tokyo, you can visit Yokohama as a day trip from there.
Coming from Tokyo, i want to visit Kyoto first and go check-in airBnB in Osaka later that night.
Few things I want to see in Kyoto:
Fushimi Inari Taisha
Cup of Noodles museum
Suggestion where to start first, if i get off Kyoto Station?
Thank u (: